Software

On CRAN

Change-point analysis:

  • gSeg: Offline change-point detection for multivariate and non-Euclidean data (segmentation).

  • gStream: Online/Sequential change-point detection for multivariate and non-Euclidean data (for streaming data).

Two-sample comparison:

  • gTests: Two-sample test for multivariate and non-Euclidean data.

  • BalanceCheck: Balance check for multiple covariates in matched observational studies.

  • gCat: Two-sample tests for categorical data utilizing similarity information among the categories. Useful when the number of categories is large and the contingency table sparsely populated.

Allele-specific copy number profiling:

  • falconx: for exome sequencing data.

  • falcon: for genome sequencing data.

On GitHub

Copy number variation analysis:

  • Marathon: Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny.